PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001724G0410

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NF-YC

Protein Properties

Length: 314aa MW: 34763 Da PI: 5.7275

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001724G0410	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.6	5.7e-18	34	109	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 l rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ s +++++ + +++dfl d+v + PH01001724G0410 34 LPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITVQRGLKTVNSSHLKQCIHSFNVYDFLRDVVSK 109 67***********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-8	3	34	IPR009072	Histone-fold
Pfam	PF00808	1.1E-16	36	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.4E-22	36	108	IPR009072	Histone-fold
SuperFamily	SSF47113	5.91E-19	41	111	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLPRIKKI MQADEDVGKI ALAVPVLVSK 60 ALELFLQDLC DRTYDITVQR GLKTVNSSHL KQCIHSFNVY DFLRDVVSKV PDMGTSDAGV 120 DDKLGKRRKA AEENSEEELK RTRTEAANHT NTGRGRGRGR GRGRRGGRGS EREIISTHEK 180 IEESHEFPPS QFSKPVHLKV DTTDDGTDAA ETKEATPLSN ARASLRNIDL NLDLDDYNEV 240 TVPPQVQPSA PAKSVAAAAA GLSVSEFNEE AKTRDFLGWQ LPEMNKMAMD PVQFALSSNH 300 RLEDEEDYDN DEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-18	36	94	16	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	162	RGRGRGRGRG
2	153	163	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001724G0410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639312.1	1e-147	dr1-associated corepressor
TrEMBL	A0A0E0A135	1e-147	A0A0E0A135_9ORYZ; Uncharacterized protein
STRING	OGLUM05G22570.2	1e-147	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-48	nuclear factor Y, subunit C11