PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001536G0490

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 265aa MW: 29442.2 Da PI: 7.6627

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001536G0490	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl PH01001536G0490 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-25	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-24	132	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTYHAKKFSV PFAPQRAQSS EHASNIGAFS GSNISNPSNP VGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSSD 120 SLSITDSAPG LQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQM IIEEQQKLGG 180 SFKTCEEKKL SESPRSLDDY PDSAQPSPKK PRMDDLSPDL VRDVAQPEFE SHLIGPWDHE 240 LCGKNICGAA FRVDEFKADP GMSKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001536G0490

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092704	0.0	FP092704.1 Phyllostachys edulis cDNA clone: bphylf036e07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961661.1	1e-175	myb family transcription factor PHL7
Swissprot	Q9SJW0	5e-72	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K3Z8V2	1e-173	K3Z8V2_SETIT; Uncharacterized protein
STRING	Si022972m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-52	G2-like family protein