PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001536G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 293aa    MW: 32639.3 Da    PI: 5.064
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001536G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.53.6e-196861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+  s +++++ + +++dfl d+v +
  PH01001536G0040  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGVKTVSSSHLKQCIHNYNVYDFLRDVVSK 86
                     5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-25372IPR009072Histone-fold
SuperFamilySSF471131.22E-20488IPR009072Histone-fold
PfamPF008084.8E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLQRGVK  60
TVSSSHLKQC IHNYNVYDFL RDVVSKVPDM GTSDVSADDK LGKRRKAAED DDEEESKRTR  120
NEAAKVANHT NTGRGRGRGR GRGRRGGRGS EREIISYEKS ENREFPPSQY SKPAHLKVDI  180
TDDGTDAIET KEVTPLSNAR ASLRNIDLNL DLDDYSEVTV SPQAQPSAPA MSVVAAATAG  240
PSVSELNEEL RTRDFLDWQL PEMNKMAMDP VQFALSSNHR LEDDEDYDND EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142RGRGRGRGRG
2133143RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001536G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639312.11e-145dr1-associated corepressor
TrEMBLA0A0D3G9B71e-144A0A0D3G9B7_9ORYZ; Uncharacterized protein
TrEMBLI1PWV51e-144I1PWV5_ORYGL; Uncharacterized protein
STRINGORGLA05G0185300.11e-145(Oryza glaberrima)
STRINGOBART05G21370.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-54nuclear factor Y, subunit C11