PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001451G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 645aa    MW: 70108.6 Da    PI: 5.9504
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001451G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.8e-3088172187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+p Weevs+k++e g++rs+k+Ck k+en+ k+yk++keg+ +r++++s  +++f+qlea
  PH01001451G0080  88 RWPREETLALIRIRSEMDAAFRNADLKAPVWEEVSRKLAELGYHRSAKKCKGKFENVDKYYKRTKEGRAGRQDGKS--YRFFSQLEA 172
                      8*********************************************************************866665..*******85 PP
2trihelix109.12.8e-34393478187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev+aLi++r e++e++++   k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  PH01001451G0080 393 RWPKEEVQALIQLRMEKDEQYQDVGPKGPLWEDISAGMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 478
                      8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.82981145IPR017877Myb-like domain
SMARTSM007170.0285147IPR001005SANT/Myb domain
CDDcd122032.35E-2687152No hitNo description
PfamPF138371.4E-2187173No hitNo description
SMARTSM007171.9E-5390452IPR001005SANT/Myb domain
PROSITE profilePS500907.724392450IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-4392449IPR009057Homeodomain-like
CDDcd122038.01E-28392457No hitNo description
PfamPF138373.5E-22392479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MQHHQGSAGS PYRVPTTDMV PFSLPPASGA VSVSSTPPPM QPQPAGTSFE ELPAGGSAAA  60
AVNFHDDYML VDVGCGRSVS KAGGSGNRWP REETLALIRI RSEMDAAFRN ADLKAPVWEE  120
VSRKLAELGY HRSAKKCKGK FENVDKYYKR TKEGRAGRQD GKSYRFFSQL EALHAAAPQQ  180
HQGTAMATAA YTATVQDPQP LAMARMAPAV LAHPGASLPD LGFSSNSESE SDDESGDEEE  240
EGPGKLRSGD GGSNKRMMAF FQGMMKQVTE KQDAMHRLFL ETLDKWEAER TARDETWRRK  300
EVARINRERE ELAKERTAAA SRDAALFAFL KRVGGQSVQL PPSGTVAVPT PMPAHAPPPP  360
HHDAAATSLQ LVPVQPKVEE GWAGGESCGA TSRWPKEEVQ ALIQLRMEKD EQYQDVGPKG  420
PLWEDISAGM RRIGYNRSAK RCKEKWENIN KYFKKVKESN KRRPEDSKTC PYFHQLDAIY  480
RKKHFAGSGG GSSAVSGASM AAVTASEKEN PQCEFELKSS NDFDKRSSGG GQNVQAPPGN  540
GETAPATTVR DSATNKEAEE TLTMEPNVQS QQQEFTAPDE TDSDDMEGNY TDEGDDDGNE  600
DNRMQHKIEF QKPKESGSSS APGPATTAAV TSSTPTSSTF LAVQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001451G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754941e-119AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
GenBankAK3761291e-119AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ391171e-113TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287UDK80.0A0A287UDK8_HORVV; Uncharacterized protein
TrEMBLA0A287UDK90.0A0A287UDK9_HORVV; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-103Trihelix family protein