PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001449G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 871aa    MW: 94795.1 Da    PI: 6.7494
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001449G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.88.7e-27156210156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k++++WtpeLH+rFv++veqL G +kA+P++ile+m++++Lt+++++SHLQkYR++
  PH01001449G0350 156 KAKVDWTPELHRRFVQCVEQL-GVDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 210
                      6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.656153212IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-26154213IPR009057Homeodomain-like
SuperFamilySSF466897.88E-18154213IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25156210IPR006447Myb domain, plants
PfamPF002491.2E-7159208IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MEEAGGVMSD IEFDFTVDDI DFGDFFLRLE DGHALPDLVV DPAEIFTDFE PVATGGEGAR  60
DQEVPSVELS ASVADVGAVN TCGGVIGEKN TAFAEAGEEK RECNYVEEVV EGNGDVGGDD  120
GGVVAEAKSP SSTTSSSQEA ESRRKSSSKH SQGKKKAKVD WTPELHRRFV QCVEQLGVDK  180
AVPSRILEIM GIDSLTRHNI ASHLQKYRSH RKHMLAREAE AASWTQRRQM YATGAGAAVK  240
RPDSNVWTVP TIGFPPPPPP PPPAPPMQHF GRQLHVWGHP TMESPRMPMW PRHLVPRAPT  300
PPWAPQPPPP SDPAFWHHPY MRGPAHMPIQ GTPCMAMPMP IPAARFPAPP VPGVVPCPMY  360
RPLTPTALAS KNQQDAQFQL QAQPSSESID AAIGDVLSKP WLPLPLGLKP PSMDSVMSEL  420
QRQDGGGQIY RIPRLSPLTL SLAAAATLNL ASSRRPSRRH GADLAPRPSV RDRKQGVPQE  480
SAVGQEDGDV PQPHVPRFHL PRRKISMSVL TPKLLERYGE NDEFYDLVFS KFLSNTTYPV  540
VVCSTAARLL LSCHSTWTPQ YPHAFEDAII GNIKTSGGQL VEDVLTMGVS AKLMHSLRMR  600
VHGDVTSSQK DANLPLDARH PRGTDENRGK LRLVQDSSRL DGARVGDGIL TELTLEKDFD  660
HGVGMRQAHG EWCICDTKSK YGERHSALRP GRDEDMSENL RDELFKRKLS RTGSRFTGKS  720
KAGESLPESE RTPLSPTSGL RIGSWASRDK NAARVEDPKK AIDVNNSSTC LESSAISREE  780
YEDRFRDCII GLKDVSDIVL KAVRAAEAKA RSADAPDEAV KVAGDAAAEL VKSAALEVWK  840
SENNGDAVVL AAKKAAASVV EAVMSTSVSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15153208257ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001449G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-46GBF's pro-rich region-interacting factor 1