PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001432G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 391aa    MW: 42323.4 Da    PI: 6.0537
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001432G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.8e-071551862655
              AP2  26 g..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g  + k+++lg f+ta  Aa+a+++a+ k++g
  PH01001432G0330 155 GrdCGKQVYLGGFDTAHAAARAYDRAAIKFRG 186
                      34445************************998 PP
2AP241.82.7e-13229279155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  PH01001432G0330 229 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 279
                      89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.194114194IPR001471AP2/ERF domain
SMARTSM003801.4E-13154200IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-9158195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-11159195IPR001471AP2/ERF domain
CDDcd000188.60E-27229289No hitNo description
PfamPF008478.0E-9229279IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16229288IPR016177DNA-binding domain
SMARTSM003807.0E-33230293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15230287IPR001471AP2/ERF domain
PROSITE profilePS5103216.041230287IPR001471AP2/ERF domain
PRINTSPR003671.1E-5231242IPR001471AP2/ERF domain
PRINTSPR003671.1E-5269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVLDLNVASP ADSGTSSSSV LNSGDAGAGG FRFGLLGSPD DENCSGELAP VATGIVTRQL  60
LPPPGGAGAG PCVAAAPCRG SRRGAEGGGR EEDPARPEVA ELAVQGRHLL PEDGPVGVAH  120
LVSLWPRLPR DWLPLIRICL AYQTINRLLL PSNSGRDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGLDAD INFNLSDYEE DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKCG  240
RWEARMGQLL GKKYIYLGLF DSEVEAARAY DRAAIRFNGR ETVTNFEPSS YNGDALPDTE  300
NEVVDADVLD LDLRISQPNM HDYKRDNIIA GLQLTCDSPE SSSTTVSQPL SSSSQWPVHH  360
QSTAVPSQHQ RLYSSACPGF FPNLQILFPL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001432G0330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851130.0AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981271.11e-159AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AMA91e-145AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-145AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A368SCZ61e-158A0A368SCZ6_SETIT; Uncharacterized protein
TrEMBLQ5Y3831e-158Q5Y383_9POAL; Floral homeotic protein
STRINGPavir.J23520.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-71related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]