PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001342G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 273aa    MW: 30538.6 Da    PI: 11.23
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001342G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  PH01001342G0270 14 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.47.1e-1870111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + eE++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  PH01001342G0270  70 LSDEEEKLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.074961IPR017930Myb domain
SuperFamilySSF466895.24E-2711108IPR009057Homeodomain-like
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
CDDcd001677.37E-81661No hitNo description
PROSITE profilePS5129427.53762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2563116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1570111IPR001005SANT/Myb domain
CDDcd001671.29E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVGFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEKLVID LHAQLGNRWS KIAARLPGRT DNEIKNHWNT HIRKKLRKMG  120
IDPVTHRPLD PPPAQELEQQ LPPQHQEPPQ LQEPPPQQHG GELLRQGAAA AAARNHGATA  180
AAGGGGGHEQ LLCFPCLCGL AVLLLLCVGC LGGVWRRRGG VAGAHVPVRH GWYHGRGLGW  240
LHPRRRRLGR RSVRPLLPRR WLRSRRLDVI RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001342G0270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074831e-176AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBankFJ9402171e-176FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.
GenBankJX2359281e-176JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149774.11e-86odorant 1 protein
SwissprotQ9C7U73e-82MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0A9ESB73e-87A0A0A9ESB7_ARUDO; Uncharacterized protein
STRINGSb04g028850.14e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-81myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]