PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001308G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 285aa    MW: 30383.3 Da    PI: 10.5508
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001308G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57352.41.5e-1689177397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +q+lws++De++lL G   f+a+tg  p   d+ a+++ +++s+s +  +  +  K++rLK Kf +           + + +hd+ + +l++ +
  PH01001308G0200  89 VQKLWSDTDEVALLTGAAAFRAHTGHVPRLpDMGALFDSIRGSLSPHLDQAKVYYKLKRLKSKFLHAAPA-------AAAGPHDRRVRDLCNNV 175
                      79************************77766**********************************99998.......78899************ PP

           DUF573  96 Wg 97 
                      Wg
  PH01001308G0200 176 WG 177
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-1690177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPSKRPSPSA MDAGAAAASP SPPRSKKRSS RPNPRMDDDR PEPNPSSRGS PAGASSRKSE  60
RKRRPRAFTD SAALAAVTAP AAAPAGGTVQ KLWSDTDEVA LLTGAAAFRA HTGHVPRLPD  120
MGALFDSIRG SLSPHLDQAK VYYKLKRLKS KFLHAAPAAA AGPHDRRVRD LCNNVWGAHL  180
VPPAEDDAEA DEGDANQRRT VPDAAAMLPV VTEVLDGYWK TNGRALSGVS LQKGLSLLGT  240
HDGRSVEAKW RRQLDAEVHT QMRRHDLAKE VYGLLIDAIK GLGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964ERKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001308G0200
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236068.11e-113STOREKEEPER protein
TrEMBLA0A0Q3INF31e-112A0A0Q3INF3_BRADI; Uncharacterized protein
STRINGBRADI3G57800.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.14e-10DNA-binding storekeeper protein-related transcriptional regulator