PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001295G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 304aa    MW: 33725.4 Da    PI: 9.73
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001295G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-331973155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  PH01001295G0130 19 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 73
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-321674IPR009057Homeodomain-like
PROSITE profilePS5129414.0321676IPR017930Myb domain
SuperFamilySSF466891.09E-161976IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-241974IPR006447Myb domain, plants
PfamPF002499.7E-102172IPR001005SANT/Myb domain
PfamPF143791.6E-10165190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MERAGYGVSA GVVLSRDPKP RLRWTPDLHE RFVEAVTKLG GPDKATPKSV LRLMGMKGLT  60
LYHLKSHLQK YRLGKQNKKD TGLETSRGAF AAQGITFSSP VPPNIPSAGN NSMGNALMTR  120
KRHRTNLQHR LVCRSTLAEE NAVLNLYTKR CLLILYWTTN DLEDEVQKKL QMRIEAQGKY  180
LQAILERAQK NLSYDASGTV NLEATRSQLT DFNLALSGFM DNVTQACEQN NGQLAKAISE  240
DNLRNSNLGF QLYHGVQEAD DVKCTPDEGL LLLDLNIKGG YDHLSSSGMR GGEADLKISQ  300
HRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001295G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569261e-113AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14.
GenBankAK3660411e-113AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647740.11e-149PREDICTED: myb family transcription factor APL-like
TrEMBLA0A0D9VJV61e-148A0A0D9VJV6_9ORYZ; Uncharacterized protein
STRINGLPERR02G23680.11e-148(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.18e-56G2-like family protein