PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001292G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 359aa    MW: 38855.8 Da    PI: 8.8698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001292G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.1e-5491361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++PwdLp+k++ ++kewyfFs+r++ky++g r+nra+ sgyWkatg+dk+++s
  PH01001292G0350   9 LPPGFRFHPTDEELILHYLRNRAASSPCPV-DIIADVDIYKFDPWDLPSKAAYGDKEWYFFSPRERKYPNGIRPNRAAGSGYWKATGTDKPIHS 101
                      79****************************.99***************888889***************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +ge vg+kk Lvfykgr pkg+kt+W+mheyrl
  PH01001292G0350 102 SaTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136
                      988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-664170IPR003441NAC domain
PROSITE profilePS5100562.8449170IPR003441NAC domain
PfamPF023651.6E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMMSNPAMLP PGFRFHPTDE ELILHYLRNR AASSPCPVDI IADVDIYKFD PWDLPSKAAY  60
GDKEWYFFSP RERKYPNGIR PNRAAGSGYW KATGTDKPIH SSATGESVGV KKALVFYKGR  120
PPKGTKTNWI MHEYRLDSAD AKAGNTYRPT KFRNASMRLD DWVLCRIYKK SSHVSPMAVP  180
PLSDHEQDEP CAFGESQLYG TSSAGMIGQG GADAFPLQAA AATQRMPRTP SISELLNDYS  240
LAQLLDDGAP AEMARPDQHA ALLGHPVVNQ FLVHSRGNNM WQLAQMGSST STSAAGDGAT  300
GKRKRSEDGG NTGLTCQPTA AGKKPNGSCF GATFQIGNGL QGSLGLGHQM LHSNMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-72917217167NO APICAL MERISTEM PROTEIN
1ut4_B1e-72917217167NO APICAL MERISTEM PROTEIN
1ut7_A1e-72917217167NO APICAL MERISTEM PROTEIN
1ut7_B1e-72917217167NO APICAL MERISTEM PROTEIN
3swm_A1e-72917220170NAC domain-containing protein 19
3swm_B1e-72917220170NAC domain-containing protein 19
3swm_C1e-72917220170NAC domain-containing protein 19
3swm_D1e-72917220170NAC domain-containing protein 19
3swp_A1e-72917220170NAC domain-containing protein 19
3swp_B1e-72917220170NAC domain-containing protein 19
3swp_C1e-72917220170NAC domain-containing protein 19
3swp_D1e-72917220170NAC domain-containing protein 19
4dul_A1e-72917217167NAC domain-containing protein 19
4dul_B1e-72917217167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001292G0350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6264010.0HM626401.1 Bambusa emeiensis NAC transcription factor 1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162550.10.0NAC transcription factor NAM-B1-like
SwissprotO492557e-87NAC29_ARATH; NAC transcription factor 29
TrEMBLE5FXA50.0E5FXA5_BAMEM; NAC transcription factor 1
STRINGTraes_4DL_F0BE36C9D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-89NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]