PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001232G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 359aa    MW: 38382.9 Da    PI: 5.1154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001232G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31172230259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++ tY+geHnhe
  PH01001232G0560 172 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRADPNTFILTYTGEHNHE 230
                      69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30157232IPR003657WRKY domain
PROSITE profilePS5081133.545166232IPR003657WRKY domain
SuperFamilySSF1182909.29E-26169232IPR003657WRKY domain
SMARTSM007741.3E-36171231IPR003657WRKY domain
PfamPF031061.7E-25173230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPSRKEPMEE EHCFNNWDLN AVVRFACRRR FSPPPQHDPS FPPLPPVAPA PEPVKEQEAG  60
AGWCFPDLCA GEGSGFGRDA DELLEAFCAA PPPLPLPLPL ALPTPQPQQQ QKQLQPVMTP  120
ADVPLQAAAP APAPARAQPS GRQVSGGVPR SKRRKNQQKK VVCHVPADGV SADVWAWRKY  180
GQKPIKGSPY PRGYYRCSSS KGCAARKQVE RSRADPNTFI LTYTGEHNHE APTHRNSLAG  240
TTRHKFPSPA SSAPPQPPPP SVVGGGQHLS PPSTSAGLSP TTPLRTLSME EEEEEEDELL  300
VEDMDIAGED DLLFLNGDSD TAELLDGGSA TPMSSLFDVV DEPFFGSPWA SGTAGAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19155233280Disease resistance protein RRS1
5w3x_D4e-19155233280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001232G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343631e-150BT034363.1 Zea mays full-length cDNA clone ZM_BFb0129I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.11e-124uncharacterized protein LOC100192069
TrEMBLA0A1D6QP271e-123A0A1D6QP27_MAIZE; WRKY transcription factor 22
STRINGGRMZM2G038158_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-51WRKY family protein