PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001227G0510

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 327aa MW: 35749.3 Da PI: 7.3539

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001227G0510	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.3	3.6e-12	22	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +W ++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + ++++ PH01001227G0510 22 EWNESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcasentagkPGSNSAKTPNQCKNKIESMKKRYRAESAVVARAgPTAAGPSWRF 115 59****************************9999999999*9877777899***************999888744566679* PP trihelix 82 fdqle 86 f +++ PH01001227G0510 116 FARMD 120 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-14	20	121	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDGLPDADVA PLAAAPPQKR DEWNESGIVR LLEAYEAKWL LRNRAKLKWS DWVDIAHEVS 60 AHCASENTAG KPGSNSAKTP NQCKNKIESM KKRYRAESAV VARAGPTAAG PSWRFFARMD 120 GLLKGPAGCS GQVQVEPSNN IDLRAPAKPE VEVEADFVRQ LTDVGPGTLS DLVNADANGS 180 VPEKAEKVDN SGQKESRAAE SDVNVSSPRS KEANEDVEEV DKVWDLSKKR KSTEFDIAKS 240 IELLASSFLK IEKARMEMYR ETEKMRVEAE IKKGEMELKR TEIMAKTQLQ IAKLFAKRLK 300 ETSSKTGGSS SVTAEVDTIT KKGENG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001227G0510

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660969.1	1e-175	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A0A9E152	1e-176	A0A0A9E152_ARUDO; Uncharacterized protein
STRING	OB09G26010.1	1e-174	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-52	sequence-specific DNA binding transcription factors