PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001208G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 229aa MW: 24935.9 Da PI: 9.0049 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.8 | 5.3e-28 | 38 | 89 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++Y+eCl+NhAa+ Ggh+vDGC+Efmp+ + + l+CaACgCHR+FHRr+++ PH01001208G0150 38 RLQYHECLRNHAAAAGGHVVDGCCEFMPA----SPDDPLTCAACGCHRSFHRRDPS 89 689*************************9....4458****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-13 | 31 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.1E-24 | 39 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-23 | 40 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.747 | 41 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-28 | 141 | 212 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.51E-19 | 145 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-23 | 155 | 210 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEFTGQEGGG DVGAASPPRP LHCGIPANGP TGTPAEARLQ YHECLRNHAA AAGGHVVDGC 60 CEFMPASPDD PLTCAACGCH RSFHRRDPSP GHAGAGAQLP LLAANTRAPV LLPPPASKHP 120 QQRLPFPYRT PSGGAGTTTE SSSEERRGPA PAPRRRSRTT FTREQKEQML AFAERVGWRI 180 QRQDEATMEQ FCAQVGVRRQ VLKVWMHNNK HSSTIRRQQL EQRQEQQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-26 | 155 | 212 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001208G0150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172063.1 | 1e-107 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q5VM82 | 7e-66 | ZHD5_ORYSJ; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A077RTB8 | 1e-109 | A0A077RTB8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A077RY20 | 1e-109 | A0A077RY20_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PTW4 | 1e-109 | A0A446PTW4_TRITD; Uncharacterized protein | ||||
STRING | LPERR01G20500.2 | 9e-77 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-36 | homeobox protein 22 |