PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001191G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 315aa    MW: 34295.6 Da    PI: 7.39
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001191G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.46.6e-1222120186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                      +W+++ +  L+ea++ ++   +r+klk  +W +++  +                  + p+qCk+k+e+++kry+++ +   +   + +  ++++
  PH01001191G0080  22 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcasentagkPGSNSAKAPNQCKNKIESMKKRYRAESAAVARAgPAAAGPSWRF 115
                      5*******************************9999999999****99877777799*****************99876666536778889*** PP

         trihelix  82 fdqle 86 
                      f +++
  PH01001191G0080 116 FARMD 120
                      **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1320121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDGLPDTDVA PLTAAPPQKR DEWSESGIVR LLEAYEAKWL LRNRAKLKWS DWVDIAHEVS  60
AHCASENTAG KPGSNSAKAP NQCKNKIESM KKRYRAESAA VARAGPAAAG PSWRFFARMD  120
GLLKGSAGCS GQVQAELSNS IDLRAPAKAE VEVEADFVRQ LTEAGPGTLS DLVNADANGS  180
VPEKAEKVDN SGQKESRAAD SDVNVSSPRS KEANEDVEEV DKVWDLSKKR KSTEFDIAKG  240
IELLASSFLK IEKARMEMYR ETEKMRVEAE IKKGEMELKR TEIMAKTQLQ IAKIFAKGLK  300
ECNSKTGGSS SNHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001191G0080
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660969.11e-162PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A0A9E1521e-166A0A0A9E152_ARUDO; Uncharacterized protein
STRINGOB09G26010.11e-161(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-46sequence-specific DNA binding transcription factors