PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001174G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 1038aa    MW: 112158 Da    PI: 7.7124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001174G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.6e-077127481354
              AP2  13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      grW A+I++      r ++++lg+f  + eA +a++ a+++++
  PH01001174G0200 712 GRWGAQIYE------RhQHVWLGTFTGEAEAVRAYDVAAQRFR 748
                      8******99......44**********99***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.804690757IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-10709757IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-11711757IPR001471AP2/ERF domain
SMARTSM003806.5E-8712763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0016925Biological Processprotein sumoylation
GO:0051176Biological Processpositive regulation of sulfur metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MANEFSGNFC TPLSQPANDS TVLEIISTVM PRYYPQLKFE RLVTSLEAKV GYDVLMADFF  60
IHRNLPRNEK ILSMKTTGCI MLIKASLRRR LSGKAPPTIK VSPPPYQSPP CRLLPCGSSS  120
RGSSRLPVAV AVLLGAEGGG GAGEGARRGR ESRKGRGGGA AAEGGPEREG EGMRRDWGGG  180
AALRDEEAEA MKLIVVQKEN LDASSCITSP PHVSFLVNGK GVDKRTNVSM ETGPQFPTDI  240
TKMLKYGANI MQAVGYFNAN YIIAVAFVNN LRSFDAPKLD DYAQPVTTDP PDSDILEGPS  300
RVSLKCPIRC KSFRRIKTPI KGRLCKHYQV LQETGDDIID ILVFPDGSWK VVSVHDEKSD  360
RHAGEVIQQN GDTVETDATP DVIDLINGND DGDLPMSLAS ASEDMKPLLN SQDLSVADYL  420
PDLPISTTAQ PEDLYVGGNN GCSNATSTSG QISLLPSTGG SGSSSFGTLE SILPQDILRP  480
VITDAVSPSL ETSNSTFSMQ HVLQGTHPGI VQLRSLIDPL PGSELARPPI PRNIRREPVA  540
VQALVAPPHN TGLSRRVQPN VYNCPPPIPQ SNSASSTYQA HQVTNADSVI TPMNIGVGPL  600
SRAPDAASLM HLQSTQQLFE RYLVTSLNYF TLFVTYLCTG LLVYYNCNKC LSYDGMVGTC  660
PGDWLLAVLA SMLWRVHGQE GACAGGEAAA ARGQRREHGD GRGRAGRGGG LGRWGAQIYE  720
RHQHVWLGTF TGEAEAVRAY DVAAQRFRDR DAVANFRLLA ESDPEAAAEL RFLAAWSKTE  780
VVDMLRKHTY LDELAQNKRA FAASSPSLPK NPTSPPLVPS TEAREHLRRR RSGVEERSGE  840
SHETDMRNTS NYLHGRVIPP HLMGTRPPSG VPGQARGANA YGAPPMQQQQ HFDQLLLSNL  900
MSQLAQAPPP QTVEVPQVMP TQPGSTISPD IHSHLFSTQR SQALRLQAVP PRPAIPQAPP  960
RLQPASLPPA APTPSMPPHV GTSNDLPELP MEQNWRPTGQ MRGSLTGAAY NQAIERYLNS  1020
AGQQTIQARP PGADARR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001174G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0996391e-128FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312674.10.0E4 SUMO-protein ligase PIAL2 isoform X2
TrEMBLA0A0E0A5H90.0A0A0E0A5H9_9ORYZ; Uncharacterized protein
STRINGBRADI1G48426.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.15e-27ethylene response DNA binding factor 3