PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001169G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 164aa    MW: 17663.4 Da    PI: 10.886
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001169G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-1072115245
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L
  PH01001169G0070  72 KEQNRLKRLLRNRVSAQQARERKKAYLTELEVKAKDLELRNAEL 115
                      78899*********************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-1271135IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1072133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.03673136IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-1276133No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-1676135No hitNo description
CDDcd147042.25E-1276126No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAAQEQEQAK TSTTSSLPSS SERSSSSAPN NLKEGGVESD EEIRRQQAQQ AAAGGQGQPE  60
AARKRGRSAG DKEQNRLKRL LRNRVSAQQA RERKKAYLTE LEVKAKDLEL RNAELEQKVS  120
TLQNENNTLR QILKNTTAHA SKRGGGGGGK GGDGGKKHHF SKS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001169G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993981e-145FP099398.1 Phyllostachys edulis cDNA clone: bphylf024b23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655674.12e-62transcription factor HY5
SwissprotQ9SM502e-37HY5_SOLLC; Transcription factor HY5
TrEMBLA0A3L6SSD36e-63A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRINGPavir.Eb00436.1.p2e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-32bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]