PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001166G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 365aa    MW: 40223.6 Da    PI: 6.3203
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001166G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.45.2e-27220269352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++i +e+l++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  PH01001166G0570 220 DHIGFEELRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 269
                      6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.235207290IPR003035RWP-RK domain
PfamPF020423.9E-21222269IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEMQGYRYYG SSDGDWSYHP LAAFPPLCSP SPLLMSENEC LPNAAEPADD HGFLGDCSSA  60
LALREEEATG YLPMIPAPAA ADDNYSYPLD VLPPLPADGA TAGLDDALLL LPFSDIDLEA  120
FGDVVDEHKV APLDTQIVPV DHHFGAQHAR SMEIINQGQN AARGVLVRDH HDDSMVVATG  180
YETAVGYSEQ QQGRPPAAAS RCVRSRSNGS AAPAGRTRLD HIGFEELRRY FYMPITKAAR  240
EMNVGLTVLK KRCRELGVAR WPHRKMKSLK SLILNVQEMG KGMSPAAMQR ELAALERHCA  300
LMEENPAIEL TERTKKLRQA CFKENYKRRA AAVNIVDHFY NFGHQQLPLP LTISRRSQSS  360
SFFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001166G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039335e-76AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042585e-76AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149575e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-76CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167086.11e-131protein RKD4-like
TrEMBLF5CJE31e-127F5CJE3_WHEAT; RWP-RK domain containing protein
STRINGEMT188511e-119(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-37RWP-RK domain-containing protein