PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001155G0480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 246aa MW: 25260.3 Da PI: 10.0144 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.4 | 2e-18 | 143 | 178 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg+ kTp+WR gp g ktLCnaCG+++++ +l+ PH01001155G0480 143 CTHCGSEKTPQWRTGPLGAKTLCNACGVRFKSGRLM 178 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.5E-17 | 137 | 187 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-14 | 141 | 201 | No hit | No description |
PROSITE profile | PS50114 | 11.517 | 141 | 173 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 141 | 175 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.56E-13 | 142 | 189 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 143 | 168 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-16 | 143 | 178 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MCVIQSEEAA ELEWLSKFVD DSYSDIPNYS SAAHAAMAAA AAASAASNGG VNSAGQDSCI 60 TAALGRGARS KRSRATAAAA AARHSLVPLP PSQSSPSSSC SSSDFPSSKP ARPNGSIGSR 120 GKKSPGAGGP AGDVGIEGGV RRCTHCGSEK TPQWRTGPLG AKTLCNACGV RFKSGRLMPE 180 YRPAASPTFV LTQHSNSHRK VMELRRQKEL ILIRGSHRDA AAAAAAAGSA GSTGRPELMF 240 RDYGVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001155G0480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097937 | 0.0 | FP097937.1 Phyllostachys edulis cDNA clone: bphylf030f10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795835.1 | 1e-106 | GATA transcription factor 2-like | ||||
Swissprot | O49741 | 4e-53 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A2S3INR4 | 1e-105 | A0A2S3INR4_9POAL; GATA transcription factor | ||||
TrEMBL | A0A2T7C9Z2 | 1e-105 | A0A2T7C9Z2_9POAL; GATA transcription factor | ||||
TrEMBL | A0A3L6S618 | 1e-104 | A0A3L6S618_PANMI; GATA transcription factor 2-like | ||||
STRING | Pavir.Ia02808.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-45 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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