PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001141G0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 118aa MW: 13073.4 Da PI: 5.1669 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.7 | 8.9e-12 | 23 | 61 | 25 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++e+eeL +kv+eL++eN aL+ el++lkk ++ +++e+ PH01001141G0260 23 QQECEELGRKVAELTTENNALRTELDQLKKACEDMEAEN 61 89*********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-6 | 23 | 58 | No hit | No description |
SuperFamily | SSF90257 | 5.49E-5 | 23 | 73 | No hit | No description |
Pfam | PF00170 | 5.0E-9 | 23 | 61 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MSSAIFLLNT KYTWHVSFST VYQQECEELG RKVAELTTEN NALRTELDQL KKACEDMEAE 60 NTRLMSQGPT VTTTLGMSIE APEAQQHDDK GQLHKNTNNN VNGNYVGGSH KPEANSR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001141G0260 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093086 | 1e-107 | FP093086.1 Phyllostachys edulis cDNA clone: bphyem203l01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228232.1 | 2e-47 | DNA-binding protein EMBP-1 isoform X2 | ||||
Swissprot | P25032 | 6e-18 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A446KY91 | 9e-52 | A0A446KY91_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_723E42163.2 | 2e-52 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 2e-07 | basic region/leucine zipper transcription factor 16 |