PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001141G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 289aa    MW: 30910.3 Da    PI: 8.2334
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001141G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-10189215127
                      XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                      e+elkrerrkq+NRe+ArrsR+RK+++
  PH01001141G0250 189 ERELKRERRKQSNRESARRSRLRKQKY 215
                      89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165966.5E-869166No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-7187216No hitNo description
PfamPF001704.0E-8189215IPR004827Basic-leucine zipper domain
CDDcd147023.62E-10194215No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDGGGGVELG VGPCCANTSW AHRASGCIGP CRAVLEREIG RHLRCCSSSS SRHGHCHSPL  60
TCLGLEEGSG DSGSEESSET RDDDTDHKDS SAPKKRKSGN NTSAEGEPSQ AALVPYAAVE  120
SPYQVKGRSA SKLPVSAPGR AALPNATPNL NIGIDLWSAS PALAVPAGQG EANPGLALAR  180
RDGVGQLDER ELKRERRKQS NRESARRSRL RKQKYDGNQK IKDLIGRGIT SCMGLAVDDE  240
SANRHFVART MPHHRREGFS APSDCWRPEE GFGVTSPPHC HWMLPHHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RRSRLRK
2205212RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001141G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930860.0FP093086.1 Phyllostachys edulis cDNA clone: bphyem203l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159000.15e-77DNA-binding protein EMBP-1-like isoform X2
TrEMBLA0A446M9547e-77A0A446M954_TRITD; Uncharacterized protein
TrEMBLA0A446M9866e-77A0A446M986_TRITD; Uncharacterized protein
STRINGTraes_2BL_245DDBC7B.22e-75(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.18e-08basic region/leucine zipper transcription factor 16