PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001119G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 280aa    MW: 30034.1 Da    PI: 8.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001119G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09129173554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  ++el+P+       K +Ka++L +  +Y+k L
  PH01001119G0330 129 HSIAERIRRERIAERMRAIQELVPNT-----NKTDKAAMLDEILDYVKFL 173
                      99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-15122183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-14126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6129173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAGQPPQAPE DDFFDQFFSL NKGGRPAGDQ PFSLALSLDA AAAAEAAGNG KRLGDNAEGG  60
KAERETVQLP GLFPPVFGGG VQPPHLRPSP PPQVFHSQQS KQGGAAVGPQ PPAPRPKVRA  120
RRGQATDPHS IAERIRRERI AERMRAIQEL VPNTNKTDKA AMLDEILDYV KFLRLQVKVL  180
SMSRLGGAGA VARLVADIPL SVKGEASDSG SKQQIWEKWS TDGTERQVAK LMEEDIGSAM  240
QFLQSKALCM MPISLAMAIY DTQHSQDGQL VKPEPNTPS*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001119G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.11e-163uncharacterized protein LOC100285681
SwissprotO227682e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8461e-162B6U846_MAIZE; BHLH transcription factor
STRINGGRMZM2G004356_P011e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]