PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001112G0620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 24164.2 Da PI: 10.0775 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.6e-21 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ PH01001112G0620 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-18 | 32 | 91 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-23 | 33 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MAPRPAEKVH VPPATGLGLG VGGGVGGGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDAAAREF RGAKAKTNFP APSLSPVVGG GGSPSSNSTL ESSGGRSGVV 120 QAPMQAMPLP PALDLDLYHR TAVAGGGVRF PFKGYPVGRP APHPYFFYDQ ATAAAAAAAS 180 YRTMKLAPPV TVATVAQSDS DSSSVVDLAP SPPAVTAKKA VSFDLDLNWP PAAEN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 29 | 90 | 1 | 63 | ATERF1 |
3gcc_A | 3e-22 | 29 | 90 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001112G0620 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096813 | 0.0 | FP096813.1 Phyllostachys edulis cDNA clone: bphylf044i05, full insert sequence. | |||
GenBank | FP101071 | 0.0 | FP101071.1 Phyllostachys edulis cDNA clone: bphylf052m18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970251.1 | 9e-95 | ethylene-responsive transcription factor 4 | ||||
Swissprot | Q40477 | 3e-35 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | K3XLF6 | 2e-93 | K3XLF6_SETIT; Uncharacterized protein | ||||
STRING | Si002729m | 4e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 8e-19 | erf domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|