PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001072G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 284aa    MW: 31573.4 Da    PI: 10.226
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001072G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.65.2e-3034132298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++rlws+ De+v+L+Gli ++ak+ +   ++ di +++  +++++s++vs++ql++K+rrLK+K++   ++ak+g+++++ ++hd++i++l+k
  PH01001072G0510  34 RPSRLWSSGDELVILRGLIAYRAKRRAlpGSTLDIGKLHGHIRSQLSVNVSTTQLSDKVRRLKQKYQLLATRAKNGRDQDLPTPHDHSIYDLAK 127
                      679***********************9655566************************************************************* PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  PH01001072G0510 128 KVWGT 132
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-2736131IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPRRSAAA SEPRAKRPRS AAVGVASSAE QMKRPSRLWS SGDELVILRG LIAYRAKRRA  60
LPGSTLDIGK LHGHIRSQLS VNVSTTQLSD KVRRLKQKYQ LLATRAKNGR DQDLPTPHDH  120
SIYDLAKKVW GTRSGGGDGG GGYENAGGGE SEEEQDSGDS DEDLESVRDD RDRKNRRLRP  180
VTMANGNGIA TGSTNDNGRG KSEFEKGKDA YPYLWETVEE LSREHPSGTA FKKAFEVLEG  240
LKARVMEEKL RKFRLTEIRQ QLRRMDLMKE TVKMVLDALE RAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001072G0510
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578208.11e-162STOREKEEPER protein
TrEMBLI1IQM51e-161I1IQM5_BRADI; Uncharacterized protein
STRINGBRADI4G31840.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-16DNA-binding storekeeper protein-related transcriptional regulator