PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001059G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 313aa    MW: 34637.6 Da    PI: 9.6954
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001059G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.17.2e-3515114297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ + sg ++sf+++h+q ife+
  PH01001059G0320  15 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGASFSFRSPHEQAIFEI 108
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  PH01001059G0320 109 ARNIWR 114
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-3116113IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGGGLASSGG ERRPLFQRLW TEEDEIVILR GFAEFTAARG TAFASHQYDT DPFYEDMRRR  60
LQLDFSKSQL VEKLRRLKRK YRNCVSRLRG SGASFSFRSP HEQAIFEIAR NIWRPTNKHG  120
REPSADSDDE DAVAAAAAAV PANTSPNGEI KSPSSGRQRR RRRTAEFAAV TAPAPAINMV  180
QPPQPVQVPL SVPVKMDDSL PALPQTPMPV TVTMEGSEPL RFPVMSPQSG VADAEKSCLT  240
PLFMEMIRAV INIGSNPFGA KLPEPPLGLP MEGEKWRKQR ILELEVYLKR IELLQDQVKA  300
TLEELKSSTP GT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001059G0320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461092.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGSb02g040550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-36DNA-binding storekeeper protein-related transcriptional regulator