PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001057G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 376aa    MW: 42881.8 Da    PI: 8.7122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001057G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.5e-067798223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      C  Cg +F+ + +Lk+H+++H
  PH01001057G0400 77 DCMECGATFKKPTHLKQHMQSH 98
                     69******************99 PP
2zf-C2H219.52.6e-06104128123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + C+   C+ s+srk++L+rH+ tH
  PH01001057G0400 104 FACHvdGCPFSYSRKDHLNRHLLTH 128
                      78*********************99 PP
3zf-C2H218.94e-06133158123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++Cp   C++ F+ k nL+rH r  H
  PH01001057G0400 133 FTCPmeGCNRKFNIKGNLQRHVREiH 158
                      89*********************988 PP
4zf-C2H220.81e-06170194123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s Lk+H  +H
  PH01001057G0400 170 FICPevNCGKTFKYASKLKKHEESH 194
                      78*******************9988 PP
5zf-C2H214.97.8e-05261285223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+  dC+ sFs ksnL +H +  H
  PH01001057G0400 261 KCHfeDCKCSFSKKSNLDKHVKAvH 285
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355272850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.96276103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-57695IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00547698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SuperFamilySSF576675.76E-1189130No hitNo description
Gene3DG3DSA:3.30.160.602.6E-1396130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.307104133IPR007087Zinc finger, C2H2
SMARTSM003550.0018104128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-8114164No hitNo description
Gene3DG3DSA:3.30.160.601.8E-7131159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.071133163IPR007087Zinc finger, C2H2
SMARTSM003558.4E-5133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6166194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.73E-5167196No hitNo description
SMARTSM003550.0032170194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281170194IPR007087Zinc finger, C2H2
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SMARTSM003557.8202227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SMARTSM0035511230251IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5241282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-7241302No hitNo description
PROSITE profilePS5015711.801260290IPR007087Zinc finger, C2H2
SMARTSM003550.13260285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5284313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.1291317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058291317IPR007087Zinc finger, C2H2
PROSITE patternPS000280293317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MREGEEAISG VGERKAAAAA PLRDIRRYKC ELCDVVRSKT RLIRAHVLEH HKDEVGDLDD  60
YREGGGGGAP PKEISHDCME CGATFKKPTH LKQHMQSHSL ERPFACHVDG CPFSYSRKDH  120
LNRHLLTHQG KLFTCPMEGC NRKFNIKGNL QRHVREIHKD GSPCESKKEF ICPEVNCGKT  180
FKYASKLKKH EESHVKLDYT EVICCEPGCM KTFTNMECLK AHNQSCHRYV QCDVCGTKQL  240
KRNFKRHQRM HEGSCVTERV KCHFEDCKCS FSKKSNLDKH VKAVHEQSRP FTCQFSGCGK  300
KFSYKHVRDN HEKSSAHVYI EGDFEEADEQ RPRSVGGRKR KSISVESLVR KRVAAPDDAP  360
AYDDGTGYLR WLLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-188022419157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-188022419157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001057G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960333.10.0transcription factor IIIA
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLK3Z7440.0K3Z744_SETIT; Uncharacterized protein
STRINGSi022364m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-116transcription factor IIIA