PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001038G0430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14525.8 Da PI: 10.3954 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H PH01001038G0430 95 HQCHICGLGFEMGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.96 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.0E-10 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.45E-6 | 40 | 62 | No hit | No description |
PROSITE profile | PS50157 | 9.93 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.45E-6 | 90 | 117 | No hit | No description |
PROSITE profile | PS50157 | 9.743 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.26 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.4E-10 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MKHPRDDDVC LSLSLTLGAA AGRKRLRRGT AGGGGEAGEF VCKTCSRAFA SFQALGGHRT 60 SHLRGRHGLA LGLAAETRMK GPAKKQLEKP AAASHQCHIC GLGFEMGQAL GGHMRRHREE 120 AAAEIPHAPP VLLELFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001038G0430 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101381 | 0.0 | FP101381.1 Phyllostachys edulis cDNA clone: bphyem106p21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198422.1 | 2e-48 | zinc finger protein ZAT8-like | ||||
Refseq | XP_020199617.1 | 2e-48 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 4e-22 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A3B6KT01 | 2e-51 | A0A3B6KT01_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_B038BE0A3.1 | 1e-49 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-11 | C2H2 family protein |