PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001035G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 318aa    MW: 33048.4 Da    PI: 6.8508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001035G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019224246123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  PH01001035G0240 224 HECSICGAEFSSGQALGGHMRRH 246
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-9123146No hitNo description
PfamPF139123.1E-11123148IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263124151IPR007087Zinc finger, C2H2
SMARTSM003550.11124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576675.33E-9219246No hitNo description
PfamPF139126.0E-13223247IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596224251IPR007087Zinc finger, C2H2
SMARTSM003550.01224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGVQEEAGTP PDAEGMAPAL ALAAVVVKGK RSKRRRVAVI AAAESSSAAT EGSSSRSGAD  60
EAASGCVTEE EEDMALCLML LARGSHGARP GSPARDADSA VAVAKEAKFR SRRPVDGAAG  120
EFVYECKTCN KCFPSFQALG GHRTSHKKPR LAPPLPPTTP SEDKKLAVAE TTTTAEEKPP  180
PPPPPARATT DPTVLAIPVI PKQEVDTNAT TITVMSNSKQ PRVHECSICG AEFSSGQALG  240
GHMRRHRPLV PVSTSVSAMD DGPRKEKSLL ELDLNMPAPC DDGEASATSP AAFAYAAKER  300
SPLLFPASAS ALVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001035G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150862.12e-99zinc finger protein ZAT5-like
TrEMBLA0A446LQ441e-100A0A446LQ44_TRITD; Uncharacterized protein
STRINGOGLUM08G21100.12e-97(Oryza glumipatula)
STRINGTraes_2BS_705DDDDC8.23e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.18e-36C2H2 family protein