PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001018G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25238.5 Da PI: 9.5614 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 99 | 140 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt +eAa+++++a+ PH01001018G0090 99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 140 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.597 | 81 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-8 | 98 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-4 | 98 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-6 | 98 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-6 | 101 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGKDSLP VDLPKPIENE KTVEVAHSNV KPFSVHPLPL TKTSDVLPES 60 SNGSDSLKED KNQYFPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI 120 HLGTVGTQDE AARLYDRAAF MCGREPNFEL SEEEKNELQK YTWDDFLALT RNTITSKKQR 180 KVGLLRRNKA DLFVGQSDGD TEMVNGGGSS HSEDGDVDTS PS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001018G0090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097030 | 0.0 | FP097030.1 Phyllostachys edulis cDNA clone: bphylf029i17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151501.1 | 1e-138 | uncharacterized protein LOC100285135 | ||||
TrEMBL | C0P9B0 | 1e-137 | C0P9B0_MAIZE; Ethylene-responsive transcription factor-like protein | ||||
STRING | OB02G25330.1 | 1e-132 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 3e-46 | ERF family protein |