PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000983G0460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 260aa MW: 28123.5 Da PI: 9.3467 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.9 | 3.3e-30 | 46 | 99 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY+eCl+NhAa+lGgh+vDGCgEfmp + g+ alkCaAC CHR+FHR++ PH01000983G0460 46 EVRYHECLRNHAAALGGHVVDGCGEFMPG-TGLGDDGALKCAACSCHRSFHRKDD 99 79**************************8.4458*******************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-26 | 47 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-16 | 47 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-25 | 48 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.87 | 49 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 171 | 239 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-19 | 173 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-25 | 180 | 236 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MEFRGQEPVD KMGVGSTPPL AYTAVLPRTP TPTSSSGNGA GAAPPEVRYH ECLRNHAAAL 60 GGHVVDGCGE FMPGTGLGDD GALKCAACSC HRSFHRKDDG QRRLLPAPAP PPTTPGAAPR 120 VPLLLPPPPH PYAAGHPHAP PFLYHHHTPS GSGGTTTESS SEERGPPSAH AMAQGGQARR 180 KRFRTKFTPE QKEQMLAFAE RVGWRMQKQD EALVEQFCAQ AGVRRQVLKV WMHNNKHNSS 240 SSSSSRMQLQ EQQSQQQQQQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-28 | 181 | 242 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000983G0460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096968 | 0.0 | FP096968.1 Phyllostachys edulis cDNA clone: bphyst021i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961117.1 | 1e-92 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | B8AX53 | 6e-86 | ZHD6_ORYSI; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A0E0DUU5 | 4e-92 | A0A0E0DUU5_9ORYZ; Uncharacterized protein | ||||
STRING | Pavir.J15638.1.p | 3e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-37 | zinc finger homeodomain 1 |