PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000970G0550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 663aa    MW: 72195.6 Da    PI: 4.4836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000970G0550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-3291252128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++ + + +    ++       + ++r    gyWkatgkd+ +++
  PH01000970G0550   9 PPGFRFSPTDEELVLFFLKRRIASGRRTP--YIADVDVYKSHPSHLPEvGAADGGQAVVLLQPAGP-----QVPQR---LGYWKATGKDRCICN 92 
                      8*********************9999544..6***************4133333334444444433.....34567...5*************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g+ vg kktLv+y+grap+ge+tdWvmhey++
  PH01000970G0550  93 -GGRPVGSKKTLVYYHGRAPRGERTDWVMHEYTI 125
                      .*******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-387148IPR003441NAC domain
PROSITE profilePS5100537.8718148IPR003441NAC domain
PfamPF023659.0E-189125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MNPPPRRWPP GFRFSPTDEE LVLFFLKRRI ASGRRTPYIA DVDVYKSHPS HLPEVGAADG  60
GQAVVLLQPA GPQVPQRLGY WKATGKDRCI CNGGRPVGSK KTLVYYHGRA PRGERTDWVM  120
HEYTIYGDAL PPAARGREAY ALYKLFEKSG AGPKNGEQYG APFPEEDWLD DDDDEGFAGA  180
ADPIPSTTSG RAAIAEEQIG DLEGLLLQIG NDQENIEPLS DFSTPVSSQV QLQHGRRQGW  240
ISDDGDKAEV TDATTSTNAM LVEENTCTEL PLGDLEGLLM KISDDQQTAE LLSDFSTSVP  300
QLQLQHDGHQ AWLNADMKEV CVADYTTSSG AVVTTEYTST DLPNGDLEGL LLQIANAQEN  360
VEPLSDFSTP VPHHDCHQVG VGDFHGSHGA TFSSVNLSSI VQESTYFDPR TEQSNQITEE  420
TSVLHSVSGL VSYDSQDADD EFLEINDFFD PEDVGQSMGC TATEHLISAS SGMFDNLEYS  480
DAPMFLPGSF DTAGVVAENQ YVNFGDSGIQ NHGFQYTNEL WTHNQVAHNV RSHMKHNHVV  540
LSSHASGTGN IRTVNEEPPN RSSSASQSWF NAALSALLDS VPTSPAMAAE HTVLNRTLQR  600
ISSFRSQQAA NEEPRTPVIQ VRRRGGGLIF VSLLVLLAAI MWTFAAGSAV KFCKGLWKSS  660
ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-26912516140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000970G0550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578349.10.0NAC domain-containing protein 17
TrEMBLI1IRD40.0I1IRD4_BRADI; Uncharacterized protein
STRINGBRADI4G34022.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-42NAC domain containing protein 17