PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000942G0680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 132aa MW: 14365 Da PI: 7.8388 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.4 | 1.6e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLHerFv+av+q GG+++AtPk il++m+v+gLt++hvkSHLQkYRl PH01000942G0680 47 RQRLRWTDELHERFVDAVTQFGGPDRATPKGILRVMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.494 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-19 | 46 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-32 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-26 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-10 | 49 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MYEPKPFSSI GSAQNNLISH NQQIEPTANN VVSNGGGDSS NNNFATRQRL RWTDELHERF 60 VDAVTQFGGP DRATPKGILR VMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDNKEL 120 GDLLAGIESS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-26 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-26 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-26 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-26 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000942G0680 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071731 | 1e-113 | AK071731.1 Oryza sativa Japonica Group cDNA clone:J023114F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563637.1 | 1e-75 | myb family transcription factor PHL7 isoform X2 | ||||
Refseq | XP_014754863.1 | 1e-75 | myb family transcription factor PHL7 isoform X2 | ||||
Refseq | XP_024312887.1 | 2e-75 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024312888.1 | 1e-75 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 2e-46 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0Q3L3I9 | 4e-74 | A0A0Q3L3I9_BRADI; Uncharacterized protein | ||||
TrEMBL | I1GXE0 | 3e-74 | I1GXE0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G36236.1 | 6e-75 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-47 | G2-like family protein |