PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000941G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Dof | ||||||||
Protein Properties | Length: 175aa MW: 18102.3 Da PI: 9.7943 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 67.4 | 2.2e-21 | 31 | 64 | 29 | 62 |
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss PH01000941G0150 31 PRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSSSS 64 9****************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 15.957 | 8 | 62 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-7 | 31 | 53 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.2E-16 | 31 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MRRCPPPRPI PTQARQAHLI EIPTTRPKPV PRHFCKSCRR YWTKGGSLRN VPVGGGSRKS 60 SSSSAVPKNA KHSKNSKRRR VAPAPEPAPS TDAATATDAD AATKGTADDP AAPPAVDGGL 120 ADSSVALGLG LTDAGGKDLS DPSPFEWPSG CDLGSDWATG VFADTDPALF LNLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 80 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000941G0150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005759 | 9e-36 | AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05. | |||
GenBank | AP014965 | 9e-36 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 9e-36 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | CT835890 | 9e-36 | CT835890.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015F07, full insert sequence. | |||
GenBank | GQ183541 | 9e-36 | GQ183541.1 Oryza sativa Japonica Group Dof-type zinc finger protein 15 mRNA, partial cds. | |||
GenBank | KC996733 | 9e-36 | KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957110.1 | 7e-47 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 3e-26 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | K3ZVZ3 | 2e-45 | K3ZVZ3_SETIT; Uncharacterized protein | ||||
STRING | Si030774m | 3e-46 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 9e-11 | DOF zinc finger protein 2 |
Publications ? help Back to Top | |||
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