PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000940G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 331aa    MW: 35202.6 Da    PI: 7.3469
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000940G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.91.5e-20232294163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+e+kr+rrkq+NRe+ArrsR+RK+ae+eeL++ +++L++eN +L++e+++++k +++l s++
  PH01000940G0470 232 EREVKRQRRKQSNRESARRSRLRKQAECEELAQHAESLKQENASLRDEVNRIRKGYDELLSKN 294
                      799*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165968.5E-4181206No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-16226290No hitNo description
PfamPF001702.1E-19232294IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-19232296IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.541234297IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-10235291No hitNo description
CDDcd147022.07E-21237288No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPYRHTHTAV PPMIPPYGTP PPPYVMYSPG GIYAHPSMPL GAHPFTPYAM TSPNGNADAT  60
GTAAATNGGG ETDGKSSEGK EKSPIKRSRG SLGSLNMITG KNSTEHGKTS GASANGAISQ  120
SGESGSESSS EGSEANSQND SQNKESGQEL DGEIRSSQNG VSRSPSQAKL NQTMAIMPMP  180
PSGPVPGPTT NLNIGMDYWA SAASSTPAIH GKATPTAVPG AVVPTEQWIQ DEREVKRQRR  240
KQSNRESARR SRLRKQAECE ELAQHAESLK QENASLRDEV NRIRKGYDEL LSKNSSLKEK  300
LGDNQHKTDE AGLDNKLQHS GDDSQKKEID *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000940G0470
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189928.11e-171bZIP transcription factor 16-like
SwissprotB6E1071e-172BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A3B6LIV01e-171A0A3B6LIV0_WHEAT; BZip type transcription factor bZIP1
TrEMBLA0A446U0X81e-171A0A446U0X8_TRITD; Uncharacterized protein
STRINGEMT281271e-171(Aegilops tauschii)
STRINGTraes_5DL_C794C1EEA.31e-171(Triticum aestivum)
STRINGTRIUR3_34165-P11e-172(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.18e-77basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]