PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000930G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 274aa    MW: 28812.6 Da    PI: 6.9882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000930G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.25.2e-4271061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC+++Cv+apyfp +qp++fanvhk+FGasnv+kll++lp+ +reda++sl+yeA+ar+ dPvyG+v+ i+ lq +++q++ e+
  PH01000930G0020   7 PCAACKLLRRKCTQECVFAPYFPPDQPSRFANVHKVFGASNVSKLLNDLPQAQREDAVNSLAYEADARLCDPVYGCVAYISILQLKIKQVRDEI 100
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  PH01000930G0020 101 AAARKE 106
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.2566107IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-417104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ ECVFAPYFPP DQPSRFANVH KVFGASNVSK LLNDLPQAQR  60
EDAVNSLAYE ADARLCDPVY GCVAYISILQ LKIKQVRDEI AAARKELAGY IGPAAFSPIV  120
APALHHPAAV QYHNAAAGMG LGFGVAPPHA HLAQMAIQHP HHHQQMVEAQ HMAAAVEVAR  180
EQDMMMRQAY RQAAVPGGGA ATVAVAPGSA EAAAYEGPPF LLQQQPPLSS QTAAALTYRM  240
EPSLPPQSSG QSHAQQQHTD GSDEGSGGAA PPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4641108114LOB family transfactor Ramosa2.1
5ly0_B3e-4641108114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000930G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681341e-133AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161127.11e-102LOB domain-containing protein 6-like
RefseqXP_020161128.11e-102LOB domain-containing protein 6-like
TrEMBLA0A3B6JFG51e-101A0A3B6JFG5_WHEAT; Uncharacterized protein
STRINGTraes_4DS_72ABC3EE5.21e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-61ASYMMETRIC LEAVES 2-like 1