PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000925G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 363aa    MW: 38067.4 Da    PI: 5.2872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000925G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-20188237255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa a++ a+++++g
  PH01000925G0400 188 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAALAYDDAALRFRG 237
                      8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.86E-20187247No hitNo description
SMARTSM003801.1E-36188251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32188247IPR001471AP2/ERF domain
PfamPF008471.6E-13188237IPR001471AP2/ERF domain
PROSITE profilePS5103225.211188245IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22188247IPR016177DNA-binding domain
PRINTSPR003672.2E-11189200IPR001471AP2/ERF domain
PRINTSPR003672.2E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAIYGRELLS KEWELGVLFR DVLRVLMCYG AEVAGPGQHR RRRLADDDHA GGGGDQEAVL  60
TTTAEVSAML SRQRQRQAQE MSAMVSALAT VVAGGAAATA SSLKRPAEGE VVSTEEPWRP  120
YCGELAVAAA PPPSASPFLV DYRAAPGQYS PASAAASSSQ YRAAATDEEL PSPSSADFGG  180
GESTPRKRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAALAYDD AALRFRGSRA  240
KLNFPQSATL PPPQQPPAPA MPPPPRPEAV LESQALSGGD SYSQYARFLQ GVGEPALPGG  300
SSGTPRTLAS PVLYNFRGEG EDEAASYLWP PERDGVPGDF AGGVGGPRLE SSTAAAGSVG  360
LM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24187245463ATERF1
3gcc_A9e-24187245463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000925G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126208e-81CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063558e-81CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.18e-85ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0REA79e-77A0A0E0REA7_ORYRU; Uncharacterized protein
STRINGORUFI12G04720.11e-77(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-23ethylene response factor 110