PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000918G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 407aa    MW: 46033.6 Da    PI: 7.418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000918G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001383105323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+  +Cgk+F +   L++H  +H
  PH01000918G0240  83 CSyeNCGKTFVDVAALRKHAHVH 105
                      77779**************9887 PP
2zf-C2H2201.8e-06110134123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   Cgk F ++s LkrH   H
  PH01000918G0240 110 YVCQepGCGKKFVDSSKLKRHYLIH 134
                      99*******************9988 PP
3zf-C2H218.45.9e-06140164123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk Fs   nL+ H++tH
  PH01000918G0240 140 FICPhpGCGKAFSLDFNLRAHLKTH 164
                      789*********************9 PP
4zf-C2H216.23e-05172194323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      Cp   Cgk+F++ s Lk+H +tH
  PH01000918G0240 172 CPfpSCGKRFTSDSKLKTHVKTH 194
                      88889*****************9 PP
5zf-C2H218.36.2e-06265290123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   Cgk + +++ L+ H++t H
  PH01000918G0240 265 YVCPyeGCGKAYIHSYKLNLHLKTqH 290
                      99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-1376107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01681105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09481110IPR007087Zinc finger, C2H2
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-884134No hitNo description
Gene3DG3DSA:3.30.160.602.0E-13108130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4110134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.129110139IPR007087Zinc finger, C2H2
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-12121173No hitNo description
Gene3DG3DSA:3.30.160.601.3E-18131165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014140164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759140169IPR007087Zinc finger, C2H2
PROSITE patternPS000280142164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-9168194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0087170194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949170194IPR007087Zinc finger, C2H2
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SuperFamilySSF576675.71E-8173194No hitNo description
SuperFamilySSF576675.71E-8260288No hitNo description
Gene3DG3DSA:3.30.160.602.7E-10261290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025265290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619265298IPR007087Zinc finger, C2H2
PROSITE patternPS000280267290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEYAAAYYYY PPSQPQTLRR PPRPAARWVK QWIPQDLATS TGKCAALFKW VREDVYRNFK  60
ENNNGPEPEA LKPEPTTEIL FLCSYENCGK TFVDVAALRK HAHVHGERQY VCQEPGCGKK  120
FVDSSKLKRH YLIHTGQKDF ICPHPGCGKA FSLDFNLRAH LKTHALENYH LCPFPSCGKR  180
FTSDSKLKTH VKTHEKMSLS FFVINKIQKS KDEDYIENVS LIVPNVMMVQ TGTPVAVQHM  240
PPSDRPQSTT KPSTPATTSF TERPYVCPYE GCGKAYIHSY KLNLHLKTQH PEHGQEENGK  300
LAASAGEHAV NEPTNQYKYA EIGDLAPNRK RSKTNPAHNV PSSKVYSVKI SSVMPADISS  360
AKNQWPGKGM YEDDSEETEE DQGNNIEDGW RYGNQNADDE ETEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-35741962119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000918G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692445.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A0E0DKW20.0A0A0E0DKW2_9ORYZ; Uncharacterized protein
STRINGOMERI05G00500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.19e-95C2H2 family protein