PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000917G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 299aa    MW: 32068.8 Da    PI: 5.863
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000917G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.34.5e-15134186355
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++kr rr+ +NRe+ArrsR+RK+a +  Le  v++L +e  +L k+l   +++
  PH01000917G0090 134 DVKRMRRMVSNRESARRSRKRKQAHLVDLESQVDKLRGEHASLFKQLTDSNQQ 186
                      579**************************************999777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-16132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.484134186IPR004827Basic-leucine zipper domain
PfamPF001701.7E-12135186IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-12135187No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-12136187No hitNo description
CDDcd147027.76E-20137188No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGREDA AEQKPGHAGL YAPFGVFSAA DLSGFGFADS NALNGSIHNH  60
LWPQSQNLSA LHPAVSTTIE SQSSICTAAS PTSATNLNMK ESHVLGGSSG SDSDSESLLD  120
TEGSPCEQST IPMDVKRMRR MVSNRESARR SRKRKQAHLV DLESQVDKLR GEHASLFKQL  180
TDSNQQFRTA VTDNRILKSD VETLRIKVKL AEDMVARGAV SCGLGLSPAL NARQACRVPD  240
VLAGLDFPSD DACFTGLSPT EQVQSSPMQS MASLESQMPG EVVDVWGWDS HSNGGMSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRSRKRK
2148155RRSRKRKQ
3150155SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000917G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954150.0FP095415.1 Phyllostachys edulis cDNA clone: bphyem113j12, full insert sequence.
GenBankFP0988050.0FP098805.1 Phyllostachys edulis cDNA clone: bphyem201m13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-160basic leucine zipper 9-like isoform X1
SwissprotQ6H5001e-147RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A194YMZ41e-158A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-42basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]