PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000887G0500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 174aa    MW: 17593.4 Da    PI: 6.2467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000887G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-182775355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  PH01000887G0500 27 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 75
                     9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.732684IPR001471AP2/ERF domain
SMARTSM003803.1E-262690IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-162678IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-262678IPR001471AP2/ERF domain
CDDcd000189.90E-142776No hitNo description
PRINTSPR003673.5E-92738IPR001471AP2/ERF domain
PfamPF008479.0E-112775IPR001471AP2/ERF domain
PRINTSPR003673.5E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVKTATSNDA AAAKQLSGGG HGGKKTYKGV RMRSWGSWVS EIRAPSQKTR IWLGSYSTAE  60
AAARAYDAAL LCLKGSAAAD LAAAAMSPKS IQLIAAAAAA NARATVFTSA DSASASDSTT  120
PACSSSNASA VSSPETVSSE AAHEGDFDGG DVDYSSLADI EAFFQSPKCM EHM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000887G0500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372129e-73BT037212.1 Zea mays full-length cDNA clone ZM_BFb0159C05 mRNA, complete cds.
GenBankBT0691619e-73BT069161.2 Zea mays full-length cDNA clone ZM_BFb0217B24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.19e-55ethylene-responsive transcription factor ERF014
TrEMBLI1Q0I85e-53I1Q0I8_ORYGL; Uncharacterized protein
STRINGORGLA06G0065100.19e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-18ERF family protein