PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000845G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 1511aa    MW: 166342 Da    PI: 4.5159
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000845G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.7e-2511211222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85  
                       f k+lt+sd+++ g +++p+ +a+ +         ++ +  +l ++d++g+ We+++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+  
  PH01000845G0410 1121 FAKQLTQSDANNGGGFSVPRFCADFIfpkldfeADPPVQ--KLLMRDLRGKPWEFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFM-- 1208
                       89*****************9888777*****95444444..89***********************************************.. PP

                       SSSEE..EEEEE-S CS
               B3   86 grsefelvvkvfrk 99  
                       +r e+el+v+v+r+
  PH01000845G0410 1209 RRPEGELLVGVRRA 1222
                       679*********97 PP
2Auxin_resp50.68.5e-1812501321169
       Auxin_resp    1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkma.fetedsserrl.sGtvvgvsdl 69  
                       aa+ a+++ +F+v+Y+Pr+++ eFvv++++ e+a++ + + +G +++m+ +e eds++  + sGtv +v  +
  PH01000845G0410 1250 AARLAAEGRPFTVTYYPRQGAGEFVVPRKEAEDAINsTTWEPGVQVRMQvMEAEDSRRSDWaSGTVKAVDPS 1321
                       678899*****************************9899*********858***************998763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd124223.75E-2045116No hitNo description
Gene3DG3DSA:3.30.70.3303.8E-647130IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5011521.488637709IPR001164Arf GTPase activating protein
SMARTSM001051.7E-20638746IPR001164Arf GTPase activating protein
PfamPF014123.8E-26640709IPR001164Arf GTPase activating protein
SuperFamilySSF578635.62E-28640709No hitNo description
PRINTSPR004052.0E-17649668IPR001164Arf GTPase activating protein
PRINTSPR004052.0E-17668685IPR001164Arf GTPase activating protein
PRINTSPR004052.0E-17689710IPR001164Arf GTPase activating protein
SMARTSM002397.9E-11879996IPR000008C2 domain
Gene3DG3DSA:2.60.40.1509.4E-22896990IPR000008C2 domain
PROSITE profilePS5000413.032906981IPR000008C2 domain
SuperFamilySSF495624.37E-20912991IPR000008C2 domain
PfamPF001689.1E-19916987IPR000008C2 domain
SuperFamilySSF1019361.2E-2611161224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-3211191224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-2011201221No hitNo description
SMARTSM010197.8E-1811211223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0711211223IPR003340B3 DNA binding domain
PfamPF023627.5E-2211211222IPR003340B3 DNA binding domain
PfamPF065072.7E-1312501320IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0005096Molecular FunctionGTPase activator activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1511 aa     Download sequence    Send to blast
MVWEGIDGGS LDQRLDSSSG GVGGGDTRHL FGEMPSHQDA TMGGVLRITV SHVLYPVMKE  60
VLHQILEMYS VEKMSMFERV NHVEAMVQLR PWQEAKQARD AFHGQCIYEG CCFLDILLVQ  120
PTPDSASSTT TRRDAEAPTI APEVIVADAR SSPSDNGHDH VDTSIADSEV PVGENSIKQA  180
TLVIAQLEDR ADNDREETVQ YTGAFGADET TEEVESQVEQ RKDKAVCDVT ELTDRFAKRN  240
EEALLVGELA KHETDVSSLQ PKEPLSYSTV EVEKEETMEP VRLEEATLAS IQQQTAHSFQ  300
DTEGQKHSET PGNHIAGRND NDKLDAELKQ EPDMEVVDGV QLQADPAVVA TAFHIEPRSS  360
DLVDSEGVRV EHSTPACELE TPDDAPREDN GSQENFSYAI ARVELGAFKE HETVGVDEAE  420
PSYRTRNECG VVAKAEASSN KEDKPNGIGK DGESDGPTRD PHLRNMVDAC SFDDQLNLCN  480
ISTPCDVVSS GTENMDSFSI NELASSAENP LEDTPSPFDD TCALDGACNE VSSENAGTFT  540
KSSFQVETKY VKDLESPPVD VIIHDEHKDD DKKGSLIEEV HMGDRIAQEW MTKMEAQLKR  600
DDCRRIDLYG SVIILYGLPG LTINSNMKLW FLAKYNMVKL SELLHRSESH ICADCSAPDP  660
KWASANIGVF ICLKCSGVHR SLGTHISKVL SVTLDPWTDN EIDSMIEVGV HLIPNGHQLI  720
LEYSYALNVL EFIEVSKWVV TLTPSQRLLF MIMQPPVKLS WVYRSELITT AHLSDDDTSI  780
YGFVASKPTW PSWLLIARVV LTLAAITSII PVKYVVELRA LYAVGVGITL GIYISVRYFF  840
QAVVLYPLLV ATIVSAVVFI VFTHLPSESS TRVLPWVFSF LVALFPVTYL LEGHLRAKSF  900
ADEDVAEKFT KLAIRDMSSS DPYVVLILGQ QKAQTLVMKC NLNPVWNEEL KLSIPRQYGP  960
MKLQVFDHDV LSKDDIMGEA EIDLQPMINA AVAFGDPELL GDMSRVVILP GEGPNLYKIP  1020
VSPSLCDFEP RGTPESNNLY VYYFPHGHSE QCPTPLPAPL PPPYIFPCTV AAVDLFADAK  1080
TDEPYATISL LPGPHRDPPP AQPDPNPNPN HAGGDGSFSY FAKQLTQSDA NNGGGFSVPR  1140
FCADFIFPKL DFEADPPVQK LLMRDLRGKP WEFRHIYRGT PRRHLLTTGW SKFVNAKLLV  1200
AGDTVVFMRR PEGELLVGVR RAPRFPVSLQ ATGPLRNARA RVPPQEVLDA ARLAAEGRPF  1260
TVTYYPRQGA GEFVVPRKEA EDAINSTTWE PGVQVRMQVM EAEDSRRSDW ASGTVKAVDP  1320
SIIWRMLEID WDDSTSSSST KSRHVNAWQV QFVGYPPLLK RLRISEGIPP PCSGSGATAD  1380
PLMAPESQTM AILLGLPIPA GMQGARHNGP TDVPTSSATI FHRENESPPN NSVDMHSSDL  1440
PDEMRSIQLF GTTITSPVQS ANNGAFEEVN QVPNGLVDGT ANEDASATNP LDWSLSKDDG  1500
HNQNDSRQGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-511041135173388Auxin response factor 5
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000845G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3624511e-164AK362451.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005H07.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.14e-73auxin response factor 17