PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000836G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 471aa    MW: 51633.9 Da    PI: 8.4882
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000836G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16200237136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg +   Tp++Rrgpdg+++LCnaCGl+++ kg++
  PH01000836G0660 200 CHHCGISAtlTPMMRRGPDGPRMLCNACGLMWANKGMM 237
                      *****88888************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.12393128IPR010399Tify domain
PfamPF062007.8E-696118IPR010399Tify domain
PROSITE profilePS5101712.927125167IPR010402CCT domain
PfamPF062033.4E-15125167IPR010402CCT domain
PROSITE profilePS501149.381194242IPR000679Zinc finger, GATA-type
SMARTSM004019.2E-11194247IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12198250No hitNo description
CDDcd002025.27E-13199242No hitNo description
Gene3DG3DSA:3.30.50.104.6E-16199241IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.2E-14200235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSGHHDAKPY QPRRGPEHPP PLQPAEEEAA AEAEAMEQHE SQQEHEEGEE DGEEEHEGGA  60
EEAAPTDADV AAAAVDAHGA MVPAAAAEAR GVPHVGSNTL TLSFQGEVYV FESVPVEKRL  120
NFPHRVASLM RFREKRKERN FDKKTRYTVR KEVALRMQRN KGQFTSSKSK AEEATSTVTS  180
SDGSPNWGAV EGLPPSASEC HHCGISATLT PMMRRGPDGP RMLCNACGLM WANKGMMRDL  240
SKAPTAPLRV VPSATKDGQN GSAEAPGGEQ QNPAAASAPA PAPAPAPAPA PAPAANGHDS  300
SPRNDLYSST ASLPPPFRPL PFPTRVVASH HDQSNGVGKA RRVRRRMRRG TRRWSLCTET  360
STVSPRCWGY KDSLMKVQAL RVNYSSESKK REALESHIAD LKTDNERLRR LYTETLFKFT  420
NQMKFHTEFQ SVKEELGKAH SRLPSMEEEH KREIKQLKPL RFLCTTPPPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340348RRVRRRMRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000836G0660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0995360.0FP099536.1 Phyllostachys edulis cDNA clone: bphyst010k11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646885.11e-109PREDICTED: GATA transcription factor 17-like isoform X1
TrEMBLA0A0E0JVI61e-115A0A0E0JVI6_ORYPU; Uncharacterized protein
STRINGOPUNC02G02970.11e-116(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-55ZIM-like 1