PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000823G0680

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 380aa MW: 43467.2 Da PI: 9.4165

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000823G0680	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67	3.8e-21	51	121	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W++ e+ a +++r+e+++++ ++k++k lWe+ s++++++gf+r+p qCk+kw+nl +r+k ++ ++++ PH01000823G0680 51 QWSHAETAAFLAIRTELDHSFLSTKRNKVLWEAASARLMAQGFSRTPDQCKSKWKNLVTRFKGSEAVAQSE 121 7**************************************************************99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	5.26E-19	50	115	No hit	No description
Pfam	PF13837	7.0E-16	51	144	No hit	No description
PROSITE profile	PS50090	7.166	52	108	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDPFHHLNSS FSNPYHPLLS SPPHQPHFPP LPPPPPPPPE PPSLERERLP QWSHAETAAF 60 LAIRTELDHS FLSTKRNKVL WEAASARLMA QGFSRTPDQC KSKWKNLVTR FKGSEAVAQS 120 EMQGGDPAGA AARGTFPFHD EMRRIFDTRV ERARALERKK AKGKDVQPED GDGGGEEDEG 180 DEEEDAEMEM GEEEDRVAEM TGGGKKRRRK AAARRTAAGG GLEGDVEAML REFMRRQMEM 240 EERWMEAAEA RDAERRAREE EWWTAMVALG EERLALVRRW REREDAWRAR AEEREERRHQ 300 LRRRPARQAR RRHILIHPYT HPLVRAKAIR YFLIIIIIII STCNANSSKS SLVMEIVIPA 360 WILEYSGRSI AAKRAPAGR*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDPFHHLNSS FSNPYHPLLS SPPHQPHFPP LPPPPPPPPE PPSLERERLP QWSHAETAAF  60
LAIRTELDHS FLSTKRNKVL WEAASARLMA QGFSRTPDQC KSKWKNLVTR FKGSEAVAQS  120
EMQGGDPAGA AARGTFPFHD EMRRIFDTRV ERARALERKK AKGKDVQPED GDGGGEEDEG  180
DEEEDAEMEM GEEEDRVAEM TGGGKKRRRK AAARRTAAGG GLEGDVEAML REFMRRQMEM  240
EERWMEAAEA RDAERRAREE EWWTAMVALG EERLALVRRW REREDAWRAR AEEREERRHQ  300
LRRRPARQAR RRHILIHPYT HPLVRAKAIR YFLIIIIIII STCNANSSKS SLVMEIVIPA  360
WILEYSGRSI AAKRAPAGR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	KKRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000823G0680

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130598	1e-115	AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBank	AP014961	1e-115	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CT836356	1e-115	CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637590.1	1e-99	trihelix transcription factor GT-3b
Refseq	XP_015637591.1	1e-99	trihelix transcription factor GT-3b
TrEMBL	A0A0E0DLG4	1e-101	A0A0E0DLG4_9ORYZ; Uncharacterized protein
STRING	OMERI05G02050.1	1e-102	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-28	Trihelix family protein