PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000823G0340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | WRKY | ||||||||
Protein Properties | Length: 205aa MW: 22209.9 Da PI: 7.0166 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.7 | 1e-27 | 71 | 129 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ve+++ d ++++itY+++H he PH01000823G0340 71 ADSWCWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVEKCRYDASLLIITYTSDHSHE 129 69************************9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-30 | 63 | 129 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.634 | 65 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-23 | 67 | 129 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-31 | 70 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-22 | 72 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MPGLASIATP ATRALHGGGK NTRTPVSVAG MTKMNSMGDG SSVPKRRKQD VQKVVVSVKA 60 EDRKAEQGPP ADSWCWRKYG QKPIKGSPHP RGYYKCSSYR GCPARKQVEK CRYDASLLII 120 TYTSDHSHED YATDPVQEQT HNSDKSDGGS ALNIDMSLAE ATAASSKQCG EEETSDFFDE 180 LEELLPLSAS PLPSLAFMVQ EQLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 72 | 129 | 16 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000823G0340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639937.1 | 3e-85 | probable WRKY transcription factor 69 | ||||
TrEMBL | Q688Q4 | 1e-85 | Q688Q4_ORYSJ; Putative WRKY transcription factor | ||||
STRING | OMERI05G02180.1 | 1e-84 | (Oryza meridionalis) | ||||
STRING | ORUFI05G02200.2 | 1e-84 | (Oryza rufipogon) | ||||
STRING | OBART05G02110.1 | 1e-84 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14912 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-31 | WRKY DNA-binding protein 65 |