PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000804G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 605aa    MW: 64790 Da    PI: 4.4992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000804G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-1821392128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdk....kyatgkrknratk...sg 81 
                      +++f F+P+d+el++ +L++k+++++l +  +i++vdiy++ P++L +       + +++ + wyfFs+ +     k+a+  rk+r++    + 
  PH01000804G0640   2 AQCFAFRPQDQELIDLFLHPKLAAQPLAA-AFIHDVDIYSAAPEELVAgltsapgTGDGDGRVWYFFSPVHYvggaKNARRGRKSRTVGadgNE 94 
                      5789**********************999.88**************85456655433447779*****98751111444555777743344466 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +W++    k+v++  +++ g  + + +  ++a+  +k  W+m ey++
  PH01000804G0640  95 FWHSETGPKTVKD--SAAGGKFQKFSYKVKTASGVVKPGWLMVEYSI 139
                      8**9999999988..666777788888878888889*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.6361157IPR003441NAC domain
SuperFamilySSF1019411.01E-264157IPR003441NAC domain
PfamPF023655.2E-125139IPR003441NAC domain
PROSITE profilePS5100512.071160320IPR003441NAC domain
PfamPF023651.4E-5192302IPR003441NAC domain
SuperFamilySSF1019419.55E-13220320IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAQCFAFRPQ DQELIDLFLH PKLAAQPLAA AFIHDVDIYS AAPEELVAGL TSAPGTGDGD  60
GRVWYFFSPV HYVGGAKNAR RGRKSRTVGA DGNEFWHSET GPKTVKDSAA GGKFQKFSYK  120
VKTASGVVKP GWLMVEYSID TQEHGGADLV LCKVYRSPRA PSRSRASLTT SAALPESACK  180
KRKAEEEHPE APPPCSARQQ TTDEEDDDLV AGLTSAPGTG DGDGRVWYFF SPVHYVGGAK  240
NARRGRKSRT VGADGNEFWH SETGPKTVKD SAAGGKFQKF SYKVKTASGV VKPGWLMVEY  300
SIDTQEHGGA DLVLCKVYRS PRAPSRSRAS LTTSAALSES ACKKRKAEEE HPEAPPPCSA  360
RQQTTDEEDD DVFAEGLNRA LTSEGYVPED AGDHHPAEAE ALPCSMPRQT DEIVELFETI  420
ERDLMSDEKD MLPLLPFGLD ELERYLFGDE PGAPPPCALP AEPEPEGYAT VGLDELERYL  480
FGDEPGAPPP CALPAEPEPE GYAAVGLDQT AVVHGPCPDD ALQVAAACLD EEEGVQLELD  540
DEFISGLPCP PFEPAYIEDL LSASGDVPMS WSAAPAAVSR LCGGDHLSSA SLRTGSFGAS  600
HAVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000804G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FQZ31e-48A0A0D3FQZ3_9ORYZ; Uncharacterized protein
STRINGOBART03G39800.12e-49(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-13NAC-domain protein 101