PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000778G0550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 313aa    MW: 34195.6 Da    PI: 10.5231
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000778G0550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.5e-1318104186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL +a   +  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s +p+f+ql+
  PH01000778G0550  18 CWSEGETAALADAWGTRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGAP------SPWPFFRQLD 104
                      7*******************************************999999********************9998886......46******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2416104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALADA WGTRYLELNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGAPSPWPFF RQLDILVGPT LSAAAKKPSP  120
PRALPVLRRR PSPSRSPSPA SPSPPMALPL PNYRRGSNLP SADLFHKAAA AAAAADSDSD  180
DGYNNNDYDD DGGGSQQSAS RSVSSRSGGG GGAVVGNKRK RGGAGGLGEL ARAIETFAEM  240
YERMEAAKQR HAEEMERQRI KFLKDLELKR MQAFVDMQLQ LARAKHARKH PDGASEMLMS  300
LAALPFLSTP AYL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000778G0550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0994480.0FP099448.1 Phyllostachys edulis cDNA clone: bphylf056j18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-145trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-150A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
STRINGSb03g030880.11e-145(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-28sequence-specific DNA binding transcription factors