PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000775G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 218aa    MW: 24996.3 Da    PI: 7.7533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000775G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-07160184123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   Cg+ F ++s LkrH  tH
  PH01000775G0560 160 YVCQepGCGRKFVDSSKLKRHYLTH 184
                      99********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-8130155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.993131160IPR007087Zinc finger, C2H2
SMARTSM003551.1131155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133155IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-8155197No hitNo description
Gene3DG3DSA:3.30.160.604.5E-13157179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.0E-4160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.027160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8180200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTSKLIARSE IAVADPARRR WCQARLVVRS KEEEGEEEAN VSKSGKNPKN QVLEWQISKF  60
MFWSGSRRIS PPPVGNAPPS SSGSEVYYPD LLPFLSMWIS GWIFFDRNLI ENNNGPEQEA  120
LKLEPTTKIL FLCSYENCCK TFVDVATLRK HAHVHDERQY VCQEPGCGRK FVDSSKLKRH  180
YLTHTEQKDF ICPHPGCGRD LQEQFRHPSE EIQNLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-15123205178PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000775G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692445.14e-47PREDICTED: uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A0E0DKW25e-46A0A0E0DKW2_9ORYZ; Uncharacterized protein
STRINGOMERI05G00500.19e-47(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-33C2H2 family protein