PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000754G0710

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 412aa MW: 44983.7 Da PI: 4.6475

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000754G0710	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	192.6	2.6e-59	49	350	3	303
GRAS 3 elLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lLl+ Aeav++gd +la+ +L+rl +l + +++++ Rla +f ++L++r+++ +++y pp++ + s +++++++ +e+sP++ PH01000754G0710 49 DLLLAGAEAVEAGDSSLASVVLSRLDDLllgipDNAAASSFDRLAYHFGQGLRSRISGAHTRCY---PPEPLP--YGSMAMSVHQIIQELSPFV 137 689**********************988776666779***************777777...566665..4778889999***** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 kf+h+taNqaIl+a+ g+ vH+iD++i++G+QWp+L+ La g s+R+T + + + + ++ ++rL++fAe+l++pf+++ l ++ PH01000754G0710 138 KFAHFTANQAILDATTGDADVHVIDLNIGEGIQWPSLMSDLARH--GGKSFRLTLIRTDADCNDSTCHAAARRLSEFAESLNLPFQYSSLCIHN 229 **************************************84..667*****8877***********************97776 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsle 272 edl ++++ + + ++++++ ++ sl++ + + +vk+l+Pk+vv+ve+e a+++s+sF+e f++al++++++f+sl+ PH01000754G0710 230 EEDL--RDFSNNCKGSVIISCDTTSMSSK----SLSKLQILLFGCVKQLQPKLVVLVEEElvrigkeASLSSASFVELFFDALHHFTTVFESLA 317 6666..89988999***99777665....5555556899***********996665555666777****************9 PP GRAS 273 aklpres..eerikvErellgreivnvvacega 303 + ++ + + vEre++g++i++ v + g+ PH01000754G0710 318 SCFSGGNhgVCLRLVEREMVGPRIQDFVGQYGS 350 99888886778899***********988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.491	21	411	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-57	49	350	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MPLDSNDLHH QDASDVGVFT SCDERVWGQE NGNLAAIQEE LMEENSLGDL LLAGAEAVEA 60 GDSSLASVVL SRLDDLLLGI PDNAAASSFD RLAYHFGQGL RSRISGAHTR CYPPEPLPYG 120 SMAMSVHQII QELSPFVKFA HFTANQAILD ATTGDADVHV IDLNIGEGIQ WPSLMSDLAR 180 HGGKSFRLTL IRTDADCNDS TCHAAARRLS EFAESLNLPF QYSSLCIHNE EDLRDFSNNC 240 KGSVIISCDT TSMSSKSLSK LQILLFGCVK QLQPKLVVLV EEELVRIGKE ASLSSASFVE 300 LFFDALHHFT TVFESLASCF SGGNHGVCLR LVEREMVGPR IQDFVGQYGS VTVEASVPEF 360 LEGFRAYCHI SPKKTSYGDE WNQVAGGRTK FAVVQHMSYV DFTAGLLEIY L*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MPLDSNDLHH QDASDVGVFT SCDERVWGQE NGNLAAIQEE LMEENSLGDL LLAGAEAVEA  60
GDSSLASVVL SRLDDLLLGI PDNAAASSFD RLAYHFGQGL RSRISGAHTR CYPPEPLPYG  120
SMAMSVHQII QELSPFVKFA HFTANQAILD ATTGDADVHV IDLNIGEGIQ WPSLMSDLAR  180
HGGKSFRLTL IRTDADCNDS TCHAAARRLS EFAESLNLPF QYSSLCIHNE EDLRDFSNNC  240
KGSVIISCDT TSMSSKSLSK LQILLFGCVK QLQPKLVVLV EEELVRIGKE ASLSSASFVE  300
LFFDALHHFT TVFESLASCF SGGNHGVCLR LVEREMVGPR IQDFVGQYGS VTVEASVPEF  360
LEGFRAYCHI SPKKTSYGDE WNQVAGGRTK FAVVQHMSYV DFTAGLLEIY L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-26	55	349	27	308	Protein SCARECROW
5b3h_A	1e-26	55	349	26	307	Protein SCARECROW
5b3h_D	1e-26	55	349	26	307	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000754G0710

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176685.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A3B6HU64	0.0	A0A3B6HU64_WHEAT; Uncharacterized protein
TrEMBL	A0A446R3V1	0.0	A0A446R3V1_TRITD; Uncharacterized protein
STRING	Traes_4AL_884BA5746.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7684	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-27	RGA-like 2