PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000729G0470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 23255 Da PI: 8.2172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++++G+g+W+++++ g+ R+ k+c++rw +yl PH01000729G0470 14 KGPWTPEEDLILVSYIQEHGSGNWRAVPSNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++ PH01000729G0470 67 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.879 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.88E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.603 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRPPCCDKA GVKKGPWTPE EDLILVSYIQ EHGSGNWRAV PSNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIVH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HIKKKLKNMS 120 AGEDGAGEGW MRPGDGGGKA SSRSRSSASL SGEGASASHS GTAPTSEGST GTCKTKAGGA 180 AATAPAFSIL ESWLLDDGTG HGEVGLMDVP LGDPSEFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 116 | 7 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000729G0470 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837778 | 1e-147 | CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695616.1 | 1e-101 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | P81392 | 2e-80 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | M0T5W9 | 3e-87 | M0T5W9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P10700_001 | 5e-88 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-78 | myb domain protein 96 |
Publications ? help Back to Top | |||
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