PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000723G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 225aa    MW: 24602.1 Da    PI: 8.2914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000723G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-121964248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       W++eEd  l + v  +G  +W tI   ++ gR+ k+c++rw ++l
  PH01000723G0640 19 SVWSKEEDRVLRQQVLVHGAQNWCTINLALP-GRSSKSCRLRWCQHL 64
                     68*****************************.***********9986 PP
2Myb_DNA-binding49.51e-1572115247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++T eEde+ +++ +++ ++ W+tIar ++ gRt++ +k+rw+++
  PH01000723G0640  72 KAFTREEDEIVIRYQRLHSNR-WSTIARFLP-GRTDNAVKNRWNSV 115
                      579******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.0551368IPR017930Myb domain
SuperFamilySSF466893.21E-2617112IPR009057Homeodomain-like
SMARTSM007173.9E-111766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-172177IPR009057Homeodomain-like
CDDcd001674.75E-112164No hitNo description
PfamPF139211.5E-102169No hitNo description
SMARTSM007176.5E-1470118IPR001005SANT/Myb domain
PfamPF002499.8E-1372116IPR001005SANT/Myb domain
PROSITE profilePS5129417.573120IPR017930Myb domain
CDDcd001671.34E-1273116No hitNo description
Gene3DG3DSA:1.10.10.606.6E-1978117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALADEADNA GERNVVKKSV WSKEEDRVLR QQVLVHGAQN WCTINLALPG RSSKSCRLRW  60
CQHLAPDVEA MKAFTREEDE IVIRYQRLHS NRWSTIARFL PGRTDNAVKN RWNSVLRKRE  120
QQSPTRPCLP LFPLVRGDVK WNARGAAPGC SQGAPGEDVA GDERGAAMEC LELMPLAPGD  180
VRDNAGAAAS KGVDCGAGDP LTELRLAPPA VVVFDAMPLQ AVRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25181197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000723G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561848.19e-81transcription factor MYB23
TrEMBLI1H7P12e-79I1H7P1_BRADI; Uncharacterized protein
STRINGBRADI1G68800.13e-80(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-35myb domain protein 73