PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000713G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 258aa    MW: 29201.6 Da    PI: 5.6835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000713G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+ +++ +G g+W+  ar   ++Rt+k+c++rw++yl
  PH01000713G0560 14 RGPWTVEEDVLLAGYIAAHGEGRWNDLARAARLRRTGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.74.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  PH01000713G0560  67 RGDFTPQEQLLILELHFRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 110
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.349961IPR017930Myb domain
SuperFamilySSF466891.24E-2912108IPR009057Homeodomain-like
SMARTSM007174.8E-121363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-211568IPR009057Homeodomain-like
CDDcd001673.96E-81661No hitNo description
PROSITE profilePS5129422.17462116IPR017930Myb domain
SMARTSM007173.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2369115IPR009057Homeodomain-like
CDDcd001674.86E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDATWMEDEG DLRRGPWTVE EDVLLAGYIA AHGEGRWNDL ARAARLRRTG KSCRLRWLNY  60
LRPDVRRGDF TPQEQLLILE LHFRWGNRWS KIAQQLPGRT DNEIKNYWRT RVQKHAKQLK  120
CDVNSKQFQD IMRHLWMPRL LERIQAAAAA AVTSASSQQA ASSTLPADQS VVPNKSMSAS  180
LGAQFPSPSN NQVMVSDQCG SGSASANSSD DMFDGSWSDL LARACDDGGD SFVLPDFELG  240
ESGDHWWSLE DIWLQQQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261111424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000713G0560
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924980.0FP092498.1 Phyllostachys edulis cDNA clone: bphyem114b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193528.11e-118transcription factor MYB108-like
SwissprotQ10MB41e-85MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3B6FUR61e-119A0A3B6FUR6_WHEAT; Uncharacterized protein
TrEMBLD8L9I21e-119D8L9I2_WHEAT; Myb-like DNA-binding domain containing protein,expressed
STRINGTraes_3B_AA6863F0D.11e-120(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-79myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]