PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000692G0440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NF-YA | ||||||||
Protein Properties | Length: 235aa MW: 24902.7 Da PI: 10.1345 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 40.7 | 7.6e-13 | 83 | 106 | 35 | 58 |
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 pylheSRh hA++R RgsgGrF PH01000692G0440 83 TVPYLHESRHLHAMKRVRGSGGRF 106 579********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-4 | 35 | 109 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-10 | 84 | 106 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 15.302 | 85 | 109 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MTEIIGSSSL LSIIATVLVK IQLTSDSLGK TVDDHMRSTL TFNNKQSVFA SQNIDYGQPI 60 ACISYPYNDS GSGGIWAAYG SNTVPYLHES RHLHAMKRVR GSGGRFLNTK QQQQLRTAST 120 KATTDGANSS GSIHLRLGGG AAGDRTTSVS ETMASQENSK RVAASAPAFT VAPRMVHKNG 180 AFFQHHGQHL SFSSHFSQAG TQGGVGGAMH NGTSRGFPLC NDQRLRTVAG DLDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000692G0440 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314352.1 | 3e-60 | nuclear transcription factor Y subunit A-5 isoform X4 | ||||
TrEMBL | Q6YZ66 | 2e-71 | Q6YZ66_ORYSJ; Uncharacterized protein OSJNBb0013K01.26 | ||||
STRING | Sb04g034760.1 | 3e-61 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-12 | nuclear factor Y, subunit A6 |